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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
29
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
117
DNA binding
Transcription
47
DNA accessibility
Target of assay
114
histone
114
histone modification
64
broad histone mark
50
narrow histone mark
3
control
Date released
134
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
132
bed narrowPeak
117
bigWig
102
bam
84
tagAlign
18
fastq
Organism
186
Homo sapiens
Biosample type
141
primary cell
in vitro differentiated cells
40
tissue
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
135
T1D
51
AMP
Genome assembly (visualization)
135
hg19
84
GRCh38
Lab
2229
AMP-T2D consortium
186
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
28
Bing Ren, UCSD
20
Karen Mohlke, UNC
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
assay_slims!
Transcription
BIOSAMPLE
ASSAY
186 results
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ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD8-positive, alpha-beta T cell
33
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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