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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
1
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
February, 2023
1
October, 2022
Available data
3101
bam
2910
bigWig
1622
bed narrowPeak
1453
tsv
1141
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
154
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
5
hdf5
4
tar
3
cool
2
bed bed3
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
153
Homo sapiens
Biosample type
153
tissue
1
cell line
Organ
84
bone element
62
kidney
6
pancreas
1
musculature of body
Project
154
AMP
Genome assembly (visualization)
1
hg19
Lab
91
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
6
audit script error
biosample_type!
in vitro differentiated cells
month_released!
August, 2022
February, 2023
BIOSAMPLE
ASSAY
154 results
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RNA microarray
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
cell line
MIN6
1
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