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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
Assay category
165
DNA binding
Target of assay
421
transcription factor
165
histone modification
164
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
78
August, 2017
32
September, 2018
18
November, 2017
16
October, 2018
7
December, 2017
7
January, 2019
7
October, 2017
Available data
791
bigWig
773
bed narrowPeak
706
bam
379
bigBed narrowPeak
295
tagAlign
165
fastq
65
bed broadPeak
30
bigBed broadPeak
17
bed bed3+
1
tagAlign bed3+
Organism
159
Homo sapiens
Biosample type
74
tissue
73
primary cell
in vitro differentiated cells
16
cell line
2
stem cell
Organ
100
pancreas
37
epithelium
33
liver
10
brain
6
spleen
2
vasculature
1
adipose tissue
1
blood
1
blood vessel
1
bodily fluid
1
connective tissue
Project
165
AMP
Genome assembly (visualization)
164
hg19
162
GRCh38
Lab
165
AMP-T2D consortium
Audit category:
53
missing controlled_by
Audit category:
24
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
August, 2022
BIOSAMPLE
ASSAY
165 results
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ChIP-seq
tissue
body of pancreas
16
islet of Langerhans
14
liver
13
pancreas
12
brain
7
+ See 3 more…
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
skeletal muscle myoblast
12
pancreatic acinar cell
8
pancreatic alpha cell
7
+ See 4 more…
cell line
HepG2
15
GM12878
1
stem cell
hESC
2
See all biosamples
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