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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1054
total RNA-seq
776
ChIP-seq
206
ATAC-seq
183
DNase-seq
100
single cell RNA-seq
20
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
1
pCHi-C
1
snATAC-seq
Assay category
1172
Transcription
776
DNA binding
395
DNA accessibility
20
3D chromatin structure
19
DNA methylation
Target of assay
670
histone modification
669
histone
352
narrow histone mark
317
broad histone mark
95
transcription factor
32
RNA binding protein
14
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
455
February, 2021
260
May, 2020
227
August, 2017
222
May, 2021
189
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
72
September, 2018
65
April, 2019
49
April, 2018
47
October, 2018
40
November, 2019
39
December, 2017
39
May, 2022
33
February, 2023
19
March, 2020
17
November, 2018
15
November, 2017
13
October, 2017
7
September, 2017
6
January, 2019
6
November, 2020
5
December, 2019
4
August, 2021
3
August, 2018
December, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
January, 2018
1
May, 2023
Available data
2242
bigWig
2222
bam
1170
tsv
1064
bed narrowPeak
592
bigBed narrowPeak
520
fastq
238
bed broadPeak
222
bed bed3+
204
tagAlign
202
bigBed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
hic
13
bedpe bed3+
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
1
txt
Organism
2377
Homo sapiens
Biosample type
1752
tissue
628
primary cell
cell line
in vitro differentiated cells
3
stem cell
Organ
598
pancreas
516
connective tissue
426
adipose tissue
281
liver
239
epithelium
164
brain
123
heart
117
kidney
101
vasculature
96
limb
95
blood vessel
73
musculature of body
70
bone element
34
eye
31
nerve
29
artery
18
ureter
17
vein
12
skeleton
11
spleen
2
pericardium
1
pituitary gland
Project
2198
AMP
182
T1D
3
HPAP
Genome assembly (visualization)
2395
GRCh38
2383
hg19
1
hg18
Lab
2122
AMP-T2D consortium
233
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
3
Klaus Kaestner, Upenn
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
27
inconsistent control
5
audit script error
Audit category:
69
missing controlled_by
Audit category:
13
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
cell line
month_released!
December, 2018
BIOSAMPLE
ASSAY
2383 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
snATAC-seq
tissue
adipose tissue
382
1
3
islet of Langerhans
266
31
42
1
2
1
1
liver
147
83
20
2
1
1
1
bone tissue
58
heart left ventricle
3
29
2
3
1
1
+ See 141 more…
primary cell
monocyte
53
84
15
CD8-positive, alpha-beta T cell
4
33
2
pancreatic beta cell
10
7
7
12
1
pancreatic alpha cell
10
7
6
12
1
pancreatic ductal cell
4
13
4
10
+ See 73 more…
stem cell
hESC
3
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