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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
single cell RNA-seq
5
Hi-C
Assay category
8
Transcription
5
3D chromatin structure
Date released
6
February, 2021
4
July, 2019
1
November, 2018
1
October, 2019
1
September, 2018
Available data
3101
bam
2906
bigWig
1685
bed narrowPeak
1469
tsv
1216
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
13
Homo sapiens
Biosample type
6
primary cell
6
tissue
1
cell line
Organ
5
kidney
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
connective tissue
1
pancreas
Project
13
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
13
AMP-T2D consortium
Audit category:
5
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
BIOSAMPLE
ASSAY
13 results
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single cell RNA-seq
Hi-C
primary cell
pancreatic cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
tissue
kidney
5
liver
1
cell line
Panc1
1
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