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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
19
RRBS
17
WGBS
Assay category
64
DNA accessibility
36
DNA methylation
Date released
64
August, 2021
23
July, 2019
7
November, 2018
6
August, 2017
Available data
3101
bam
2906
bigWig
1685
bed narrowPeak
1469
tsv
1216
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
100
Homo sapiens
Biosample type
89
tissue
10
primary cell
1
cell line
Organ
68
kidney
8
heart
6
epithelium
6
pancreas
4
musculature of body
3
connective tissue
3
liver
2
adipose tissue
2
brain
2
spleen
2
vasculature
1
blood vessel
1
eye
1
limb
1
pericardium
Project
100
AMP
Genome assembly (visualization)
81
GRCh38
19
hg19
Lab
64
Katalin Susztak, Upenn
36
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
BIOSAMPLE
ASSAY
100 results
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ATAC-seq
RRBS
WGBS
tissue
kidney
64
1
heart left ventricle
1
2
pancreas
1
2
adipose tissue
2
body of pancreas
2
+ See 11 more…
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
epithelial cell of proximal tubule
1
hepatocyte
1
+ See 5 more…
cell line
HepG2
1
See all biosamples
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