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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1431
ChIP-seq
1369
total RNA-seq
468
ATAC-seq
361
single cell RNA-seq
201
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
48
pCHi-C
27
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
27
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
August, 2021
October, 2019
3
October, 2022
2
November, 2019
1
December, 2018
1
March, 2019
1
March, 2023
Available data
17
hic
15
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
bedpe
1
fastq
Organism
27
Homo sapiens
Biosample type
15
tissue
9
primary cell
3
cell line
in vitro differentiated cells
Organ
8
pancreas
7
epithelium
6
musculature of body
4
blood vessel
4
limb
4
liver
4
vasculature
3
brain
2
heart
1
connective tissue
1
kidney
1
vein
Project
23
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
1
GRCh38
Lab
19
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
audit script error
1
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
October, 2019
BIOSAMPLE
ASSAY
27 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart left ventricle
1
+ See 4 more…
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
endothelial cell of hepatic sinusoid
1
+ See 4 more…
cell line
HepG2
2
EndoC_BH1
1
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