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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
121
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
95
transcription factor
23
RNA binding protein
19
control
16
recombinant protein
9
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
139
fastq
138
bam
118
bigWig
111
bed narrowPeak
109
bigBed narrowPeak
12
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
139
Homo sapiens
Biosample type
74
tissue
61
cell line
in vitro differentiated cells
3
stem cell
1
primary cell
Organ
101
liver
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
139
AMP
Genome assembly (visualization)
118
GRCh38
110
hg19
Lab
139
AMP-T2D consortium
Audit category:
27
inconsistent control
Audit category:
3
missing controlled_by
Audit category:
7
inconsistent control read length
4
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
January, 2018
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
tissue
liver
42
2
right lobe of liver
10
1
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 2 more…
cell line
HepG2
45
1
GM12878
15
stem cell
hESC
3
primary cell
pancreatic cell
1
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