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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
154
total RNA-seq
128
ATAC-seq
117
single cell RNA-seq
56
snATAC-seq
17
pCHi-C
4
RRBS
3
DNase-seq
3
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
273
Transcription
187
DNA accessibility
162
DNA binding
5
DNA methylation
3
3D chromatin structure
Target of assay
154
histone
154
histone modification
83
broad histone mark
71
narrow histone mark
8
control
3
RNA binding protein
3
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
June, 2019
30
August, 2017
18
July, 2019
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
6
November, 2020
3
November, 2017
2
June, 2018
1
March, 2023
1
November, 2018
1
October, 2019
Available data
353
bigWig
332
bam
171
fastq
160
bed narrowPeak
154
tsv
96
tagAlign
73
zippedFastqFolder
19
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
6
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
2
csv
2
hdf5
1
bed bed3
1
hic
Organism
647
Homo sapiens
Biosample type
2599
tissue
647
primary cell
583
cell line
in vitro differentiated cells
10
stem cell
Organ
epithelium
346
pancreas
33
vasculature
29
blood vessel
23
kidney
22
connective tissue
22
vein
16
brain
12
liver
8
blood
8
bodily fluid
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
eye
1
pericardium
Project
270
AMP
204
T1D
172
HPAP
1
ITG
Genome assembly (visualization)
373
hg19
282
GRCh38
Lab
239
Kyle Gaulton, UCSD
235
AMP-T2D consortium
172
Klaus Kaestner, Upenn
1
ITG
Audit category:
27
audit script error
23
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
June, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
647 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
pCHi-C
RRBS
DNase-seq
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
15
1
1
Langerhans cell
85
48
CD8-positive, alpha-beta T cell
33
4
2
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
22
1
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