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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
51
ChIP-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
60
Transcription
51
DNA binding
41
DNA methylation
Target of assay
31
transcription factor
13
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
76
bed narrowPeak
75
bam
75
fastq
58
bigWig
36
bigBed narrowPeak
7
txt
4
bed bed3+
Organism
251
Homo sapiens
Biosample type
134
primary cell
114
tissue
in vitro differentiated cells
3
stem cell
Organ
104
pancreas
88
liver
80
epithelium
2
musculature of body
Project
134
HPAP
117
AMP
Genome assembly (visualization)
78
hg19
39
GRCh38
Lab
134
Klaus Kaestner, Upenn
53
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
1
audit script error
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
June, 2019
BIOSAMPLE
ASSAY
251 results
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Clear Filters
ATAC-seq
ChIP-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
38
20
islet of Langerhans
18
6
right lobe of liver
10
skeletal muscle tissue
1
1
stem cell
hESC
3
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