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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
29
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
1
DNA accessibility
Target of assay
25
histone
25
histone modification
16
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
26
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
Available data
26
bigWig
19
bed narrowPeak
15
tagAlign
14
bam
13
bed broadPeak
9
tsv
6
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
52
Homo sapiens
Biosample type
49
tissue
3
primary cell
Organ
787
pancreas
751
liver
561
connective tissue
483
adipose tissue
377
epithelium
310
heart
252
brain
198
kidney
183
vasculature
179
blood vessel
147
bone element
94
artery
82
limb
68
blood
68
bodily fluid
52
musculature of body
42
nerve
26
eye
24
spleen
22
vein
20
lung
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
31
hg19
12
GRCh38
Lab
52
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
in vitro differentiated cells
month_released!
June, 2019
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
52 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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