Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
644
ChIP-seq
301
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
48
WGBS
33
DNase-seq
14
Hi-C
11
pCHi-C
10
RRBS
6
MeRIP-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
2
small RNA-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
FAIRE-seq
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
Date released
100
May, 2020
39
May, 2022
May, 2021
14
September, 2018
12
February, 2023
10
February, 2021
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
2
October, 2019
1
January, 2018
1
November, 2019
1
November, 2020
Available data
81
bam
81
bigWig
39
zippedFastqFolder
36
bed narrowPeak
32
fastq
22
bigBed narrowPeak
13
tsv
2
bed bed3
Organism
200
Homo sapiens
Biosample type
tissue
187
primary cell
in vitro differentiated cells
13
cell line
Organ
75
epithelium
74
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
2
connective tissue
2
liver
1
blood
1
bodily fluid
Project
151
AMP
49
HPAP
Genome assembly (visualization)
84
hg19
46
GRCh38
Lab
151
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
15
inconsistent ontology term
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
tissue
month_released!
May, 2021
BIOSAMPLE
ASSAY
200 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
macrophage
11
+ See 34 more…
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
3
GM12878
1
HepG2
1
See all biosamples
Download