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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
114
ChIP-seq
2
ATAC-seq
Assay category
206
DNA accessibility
114
DNA binding
Target of assay
65
histone
65
histone modification
49
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
70
November, 2017
40
August, 2017
9
November, 2018
9
October, 2019
4
October, 2017
1
March, 2019
November, 2020
Available data
3095
bam
2905
bigWig
1683
bed narrowPeak
1465
tsv
1217
fastq
1024
bigBed narrowPeak
358
tagAlign
320
bed broadPeak
283
bigBed broadPeak
247
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
tagAlign bed3+
1
vcf
Organism
314
Homo sapiens
Biosample type
213
tissue
59
cell line
48
primary cell
in vitro differentiated cells
Organ
78
kidney
63
liver
47
brain
46
musculature of body
36
limb
30
heart
22
epithelium
21
pancreas
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
320
AMP
Genome assembly (visualization)
296
hg19
280
GRCh38
Lab
318
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
4
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
November, 2020
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
320 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 45 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 17 more…
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