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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1349
total RNA-seq
482
ATAC-seq
358
single cell RNA-seq
210
DNase-seq
87
RNA microarray
84
snATAC-seq
63
WGBS
52
pCHi-C
22
Hi-C
6
RRBS
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1349
Transcription
Date released
523
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
89
August, 2017
89
February, 2023
67
August, 2021
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
13
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
November, 2020
2
October, 2018
1
May, 2023
Available data
1146
tsv
1113
bam
1109
bigWig
228
fastq
59
txt
2
bed bed3+
Organism
1349
Homo sapiens
Biosample type
1006
tissue
230
primary cell
in vitro differentiated cells
113
cell line
Organ
448
connective tissue
401
pancreas
389
adipose tissue
185
liver
124
epithelium
62
bone element
61
heart
56
blood vessel
56
vasculature
55
kidney
54
artery
19
eye
13
brain
8
embryo
7
limb
5
nerve
4
musculature of body
4
skeleton
1
spinal cord
Project
1152
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1110
hg19
1108
GRCh38
Lab
1068
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
November, 2020
July, 2019
BIOSAMPLE
ASSAY
1349 results
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Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
165
bone tissue
58
kidney
49
+ See 40 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 32 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
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