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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
358
ChIP-seq
7
ATAC-seq
Assay category
358
DNA binding
7
DNA accessibility
Target of assay
295
histone
295
histone modification
162
narrow histone mark
133
broad histone mark
58
control
5
transcription factor
Date released
84
May, 2021
78
November, 2017
71
August, 2017
50
May, 2020
49
October, 2019
14
October, 2017
10
February, 2021
5
February, 2023
4
August, 2021
Available data
3025
bam
2863
bigWig
1640
bed narrowPeak
1467
tsv
1157
fastq
980
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
358
Homo sapiens
Biosample type
243
tissue
101
primary cell
in vitro differentiated cells
21
cell line
Organ
119
brain
87
liver
16
pancreas
15
musculature of body
9
connective tissue
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
bone element
4
epithelium
4
skeleton
1
pituitary gland
Project
281
AMP
84
T1D
Genome assembly (visualization)
230
GRCh38
228
hg19
Lab
281
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
1
inconsistent replicate
Audit category:
4
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
October, 2018
BIOSAMPLE
ASSAY
365 results
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ChIP-seq
ATAC-seq
tissue
liver
70
substantia nigra
16
brain
14
1
caudate nucleus
15
layer of hippocampus
15
+ See 47 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
hepatocyte
4
osteoblast
1
cell line
HepG2
12
1
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
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