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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
Assay category
38
DNA binding
Target of assay
23
histone
23
histone modification
15
transcription factor
13
narrow histone mark
11
chromatin remodeller
10
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
10
August, 2017
5
November, 2018
2
December, 2017
October, 2018
Available data
38
bam
38
bigWig
38
fastq
36
bed narrowPeak
30
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
2
bed bed3+
Organism
38
Homo sapiens
Biosample type
26
cell line
in vitro differentiated cells
5
primary cell
5
tissue
2
stem cell
Organ
27
liver
8
pancreas
4
epithelium
Project
38
AMP
Genome assembly (visualization)
38
hg19
34
GRCh38
Lab
38
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
38
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
October, 2018
August, 2022
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
cell line
HepG2
26
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
tissue
pancreas
4
liver
1
stem cell
hESC
2
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