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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
27
snATAC-seq
17
ATAC-seq
17
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
1
pCHi-C
Assay category
540
Transcription
44
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
686
February, 2021
299
October, 2019
289
August, 2017
267
May, 2021
242
August, 2021
216
June, 2019
189
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
53
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
November, 2018
34
December, 2018
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
December, 2017
3
December, 2019
3
June, 2018
1
August, 2022
Available data
549
bam
537
tsv
529
bigWig
89
txt
45
fastq
22
bed narrowPeak
8
tagAlign
5
csv
1
bed bed3
1
bed bed3+
Organism
686
Homo sapiens
Biosample type
544
tissue
94
cell line
48
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
liver
Project
641
AMP
45
HPAP
Genome assembly (visualization)
546
hg19
545
GRCh38
Lab
641
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
32
audit script error
biosample_type!
in vitro differentiated cells
month_released!
October, 2018
organ_slims!
liver
BIOSAMPLE
ASSAY
686 results
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Clear Filters
total RNA-seq
RNA microarray
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
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