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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
67
total RNA-seq
64
ATAC-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
173
Transcription
70
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
681
February, 2021
328
November, 2017
291
May, 2020
273
August, 2021
272
August, 2017
257
October, 2019
218
June, 2019
200
May, 2022
189
February, 2023
183
May, 2021
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
9
October, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
116
tsv
81
bed narrowPeak
64
xls
57
txt
25
bigWig
12
bam
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
272
Homo sapiens
Biosample type
229
tissue
44
cell line
in vitro differentiated cells
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
2
artery
2
epithelium
1
adipose tissue
1
connective tissue
Project
273
AMP
Genome assembly (visualization)
72
GRCh38
24
hg19
Lab
128
Katalin Susztak, Upenn
109
AMP-T2D consortium
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
273 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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