Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
38
ChIP-seq
29
ATAC-seq
17
pCHi-C
1
DNAme array
Assay category
98
Transcription
38
DNA binding
29
DNA accessibility
1
DNA methylation
Target of assay
35
histone
35
histone modification
22
broad histone mark
13
narrow histone mark
3
control
Date released
681
February, 2021
328
November, 2017
291
May, 2020
273
August, 2021
272
August, 2017
257
October, 2019
218
June, 2019
200
May, 2022
189
February, 2023
183
May, 2021
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
9
October, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
214
bigWig
192
bam
128
bed narrowPeak
94
tsv
tagAlign
2
bed bed3+
Organism
183
Homo sapiens
Biosample type
in vitro differentiated cells
122
primary cell
40
tissue
21
cell line
Organ
58
pancreas
21
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
114
AMP
69
T1D
Genome assembly (visualization)
143
hg19
108
GRCh38
Lab
104
Kyle Gaulton, UCSD
79
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
183 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
DNAme array
primary cell
monocyte
52
1
13
1
1
CD8-positive, alpha-beta T cell
2
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
4
1
16
See all biosamples
Download