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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
89
total RNA-seq
5
ATAC-seq
3
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
124
DNA binding
89
Transcription
9
DNA accessibility
2
DNA methylation
Target of assay
98
histone modification
97
histone
49
broad histone mark
48
narrow histone mark
25
transcription factor
4
RNA binding protein
1
chromatin remodeller
1
control
Date released
529
February, 2021
334
November, 2017
260
May, 2020
224
August, 2017
214
May, 2021
210
June, 2019
203
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
September, 2018
65
April, 2019
49
April, 2018
47
October, 2018
40
May, 2024
38
December, 2017
31
November, 2019
30
December, 2018
26
January, 2019
25
August, 2021
20
May, 2022
18
March, 2020
14
October, 2017
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
4
January, 2018
3
August, 2018
3
June, 2018
3
September, 2020
Available data
233
fastq
228
bam
224
bigWig
99
bed narrowPeak
89
tsv
71
tagAlign
41
bigBed narrowPeak
40
bed broadPeak
26
bed bed3+
14
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
218
Homo sapiens
Biosample type
178
tissue
in vitro differentiated cells
46
primary cell
Organ
159
pancreas
18
liver
17
adipose tissue
17
connective tissue
17
epithelium
13
musculature of body
Project
224
AMP
Genome assembly (visualization)
222
hg19
199
GRCh38
Lab
224
AMP-T2D consortium
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
BIOSAMPLE
ASSAY
224 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 4 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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