Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
single cell RNA-seq
58
ChIP-seq
48
total RNA-seq
20
ATAC-seq
17
DNase-seq
Assay category
118
Transcription
58
DNA binding
37
DNA accessibility
Target of assay
52
histone
52
histone modification
29
narrow histone mark
23
broad histone mark
6
RNA binding protein
6
transcription factor
Date released
September, 2018
33
April, 2018
33
July, 2018
26
February, 2021
23
October, 2019
18
June, 2019
17
August, 2017
13
November, 2019
7
August, 2020
5
December, 2019
5
July, 2019
5
May, 2021
5
September, 2017
4
May, 2019
4
November, 2017
3
August, 2018
3
August, 2021
3
March, 2020
3
September, 2020
2
October, 2018
1
June, 2018
Available data
211
bigWig
203
bam
118
tsv
104
fastq
85
bed narrowPeak
47
bigBed narrowPeak
20
bed broadPeak
20
bigBed broadPeak
19
bed bed3+
3
tagAlign
Organism
213
Homo sapiens
Biosample type
164
primary cell
49
cell line
in vitro differentiated cells
Organ
561
pancreas
517
liver
512
connective tissue
424
adipose tissue
265
heart
217
brain
213
epithelium
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
18
ureter
16
spleen
12
vein
8
embryo
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
199
AMP
10
HPAP
4
T1D
Genome assembly (visualization)
230
hg19
213
GRCh38
Lab
203
AMP-T2D consortium
10
Klaus Kaestner, Upenn
Audit category:
54
inconsistent ontology term
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
BIOSAMPLE
ASSAY
213 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
primary cell
pancreatic alpha cell
12
7
10
pancreatic beta cell
12
7
6
pancreatic acinar cell
12
2
2
endothelial cell of umbilical vein
10
2
pancreatic delta cell
11
+ See 18 more…
cell line
EndoC_BH1
13
33
1
glomerular visceral epithelial cell
1
1
See all biosamples
Download