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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
705
ChIP-seq
202
total RNA-seq
127
single cell RNA-seq
47
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
705
DNA binding
329
Transcription
87
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
146
control
133
histone modification
132
histone
83
RNA binding protein
82
recombinant protein
70
broad histone mark
62
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
324
November, 2017
233
August, 2017
88
November, 2018
76
February, 2023
September, 2018
60
October, 2018
51
December, 2017
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
3029
bam
2838
bigWig
1639
bed narrowPeak
1443
tsv
1144
fastq
1011
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
7
bed bed3
7
csv
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1137
Homo sapiens
Biosample type
427
cell line
377
tissue
336
primary cell
in vitro differentiated cells
4
stem cell
Organ
450
liver
399
pancreas
177
epithelium
60
blood
60
bodily fluid
46
connective tissue
43
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
975
AMP
169
HPAP
Genome assembly (visualization)
818
hg19
761
GRCh38
1
hg18
Lab
949
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
51
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
September, 2018
BIOSAMPLE
ASSAY
1144 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
103
20
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
+ See 8 more…
primary cell
pancreatic alpha cell
13
42
12
10
6
Langerhans cell
34
27
pancreatic beta cell
13
11
12
6
exocrine cell
39
skeletal muscle myoblast
15
1
1
+ See 18 more…
stem cell
hESC
3
1
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