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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
91
ATAC-seq
91
total RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
154
DNA binding
93
DNA accessibility
92
Transcription
Target of assay
90
histone
90
histone modification
56
broad histone mark
43
control
34
narrow histone mark
21
transcription factor
15
RNA binding protein
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
173
bed narrowPeak
155
bam
136
fastq
112
bigWig
109
bigBed narrowPeak
18
tsv
5
bed bed3
4
txt
Organism
344
Homo sapiens
Biosample type
249
tissue
90
primary cell
in vitro differentiated cells
6
cell line
Organ
109
pancreas
93
heart
54
epithelium
35
artery
35
blood vessel
35
vasculature
31
eye
24
adipose tissue
24
connective tissue
23
kidney
8
bone element
8
skeleton
1
brain
Project
246
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
146
GRCh38
145
hg19
Lab
246
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
345 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
heart left ventricle
35
body of pancreas
33
kidney
23
islet of Langerhans
11
5
2
+ See 14 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 3 more…
cell line
EndoC_BH1
3
2
1
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