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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
67
total RNA-seq
64
ATAC-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
173
Transcription
70
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
641
February, 2021
397
November, 2017
284
August, 2017
273
August, 2021
272
October, 2019
194
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
101
February, 2023
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
61
May, 2021
56
November, 2019
55
March, 2020
51
December, 2017
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2021
6
April, 2018
6
September, 2017
5
March, 2019
4
January, 2018
4
March, 2023
3
December, 2019
1
August, 2022
1
October, 2022
Available data
116
tsv
78
bed narrowPeak
64
xls
57
txt
22
bigWig
8
bam
2
bedpe bed3+
2
hic
1
vcf
Organism
272
Homo sapiens
Biosample type
229
tissue
44
cell line
in vitro differentiated cells
primary cell
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
4
pancreas
2
artery
2
epithelium
1
adipose tissue
1
connective tissue
Project
273
AMP
Genome assembly (visualization)
72
GRCh38
24
hg19
Lab
128
Katalin Susztak, Upenn
109
AMP-T2D consortium
36
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
273 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
18
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
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