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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
497
total RNA-seq
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
8
ChIP-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
515
Transcription
45
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
579
February, 2021
406
November, 2017
343
August, 2017
333
May, 2020
289
October, 2019
274
August, 2021
245
May, 2021
200
May, 2022
192
June, 2019
183
February, 2023
162
July, 2018
117
May, 2019
106
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
51
December, 2017
49
April, 2018
47
September, 2023
46
March, 2020
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
2
June, 2018
1
August, 2022
Available data
524
bam
511
tsv
503
bigWig
45
fastq
23
bed narrowPeak
8
tagAlign
6
csv
5
txt
2
bed bed3
2
bed bed3+
Organism
579
Homo sapiens
Biosample type
461
tissue
70
cell line
48
primary cell
in vitro differentiated cells
Organ
447
connective tissue
386
adipose tissue
66
artery
66
blood vessel
66
bone element
66
heart
66
vasculature
8
kidney
8
skeleton
6
epithelium
6
limb
6
pancreas
3
liver
Project
534
AMP
45
HPAP
Genome assembly (visualization)
522
hg19
520
GRCh38
Lab
534
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
32
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
579 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
subcutaneous adipose tissue
2
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
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