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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
523
total RNA-seq
84
RNA microarray
59
ChIP-seq
27
snATAC-seq
18
ATAC-seq
18
single cell RNA-seq
6
WGBS
3
snDrop-seq
2
pCHi-C
Assay category
541
Transcription
59
DNA binding
45
DNA accessibility
6
DNA methylation
Target of assay
36
transcription factor
16
control
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
601
bam
567
bigWig
537
tsv
96
fastq
89
txt
61
bed narrowPeak
36
bigBed narrowPeak
8
tagAlign
6
csv
5
bed bed3+
2
bed bed3
Organism
740
Homo sapiens
Biosample type
593
tissue
96
cell line
in vitro differentiated cells
48
primary cell
3
stem cell
Organ
447
connective tissue
386
adipose tissue
150
bone element
66
artery
66
blood vessel
66
heart
66
vasculature
51
liver
32
epithelium
32
pancreas
8
kidney
8
skeleton
6
limb
Project
695
AMP
45
HPAP
Genome assembly (visualization)
587
hg19
585
GRCh38
Lab
695
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
110
inconsistent ontology term
32
audit script error
27
inconsistent control
1
inconsistent replicate
Audit category:
2
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
740 results
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total RNA-seq
RNA microarray
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
liver
38
1
right lobe of liver
10
+ See 14 more…
cell line
smooth muscle cell of the coronary artery
52
6
8
EndoC_BH1
26
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
stem cell
hESC
3
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