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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
total RNA-seq
51
single cell RNA-seq
25
ChIP-seq
11
ATAC-seq
Assay category
177
Transcription
25
DNA binding
11
DNA accessibility
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
40
May, 2024
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
194
bam
190
bigWig
169
tsv
80
fastq
21
bed narrowPeak
21
bigBed narrowPeak
Organism
213
Homo sapiens
Biosample type
142
tissue
48
primary cell
23
cell line
Organ
157
pancreas
33
epithelium
18
blood
18
bodily fluid
14
kidney
7
spleen
5
liver
3
connective tissue
1
adipose tissue
Project
213
AMP
Genome assembly (visualization)
202
GRCh38
191
hg19
Lab
199
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
213 results
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Clear Filters
total RNA-seq
single cell RNA-seq
ChIP-seq
ATAC-seq
tissue
islet of Langerhans
120
kidney
3
11
spleen
7
adipose tissue
1
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
pancreatic acinar cell
5
pancreatic delta cell
4
pancreatic cell
3
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cell line
GM12878
18
HepG2
5
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