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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ATAC-seq
89
total RNA-seq
25
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
93
DNA accessibility
90
Transcription
25
DNA binding
Target of assay
14
transcription factor
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
4
control
3
narrow histone mark
Date released
686
February, 2021
299
October, 2019
289
August, 2017
267
May, 2021
242
August, 2021
216
June, 2019
189
February, 2023
168
July, 2018
160
May, 2022
147
May, 2020
120
May, 2019
98
July, 2019
91
November, 2017
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
November, 2019
53
March, 2020
49
April, 2018
47
September, 2023
40
May, 2024
35
November, 2018
34
December, 2018
25
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
December, 2017
3
December, 2019
3
June, 2018
1
August, 2022
Available data
101
fastq
84
bed narrowPeak
25
bam
21
bigBed narrowPeak
21
bigWig
16
tsv
5
bed bed3
4
txt
Organism
213
Homo sapiens
Biosample type
102
tissue
88
primary cell
24
cell line
in vitro differentiated cells
Organ
56
pancreas
52
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
18
blood
18
bodily fluid
8
bone element
8
skeleton
7
spleen
liver
1
adipose tissue
1
brain
1
connective tissue
Project
115
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
56
GRCh38
54
hg19
Lab
115
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
liver
BIOSAMPLE
ASSAY
214 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
2
retina
15
2
pigmented layer of retina
12
2
spleen
7
+ See 7 more…
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
cell line
GM12878
18
EndoC_BH1
3
2
1
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