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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
229
ChIP-seq
93
total RNA-seq
10
MeRIP-seq
9
WGBS
6
ATAC-seq
6
RRBS
5
DNase-seq
1
FAIRE-seq
Assay category
229
DNA binding
93
Transcription
15
DNA methylation
12
DNA accessibility
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
47
control
25
transcription factor
5
nucleotide modification
4
RNA binding protein
1
chromatin remodeller
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
234
bam
233
fastq
229
bigWig
101
bed narrowPeak
93
tsv
71
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
27
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
352
Homo sapiens
Biosample type
288
tissue
in vitro differentiated cells
65
primary cell
6
cell line
Organ
198
pancreas
63
connective tissue
57
adipose tissue
54
liver
35
epithelium
26
musculature of body
Project
359
AMP
Genome assembly (visualization)
233
hg19
206
GRCh38
Lab
349
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
Audit category:
34
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
359 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
WGBS
ATAC-seq
RRBS
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
42
89
4
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
primary cell
skeletal muscle myoblast
15
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
osteoblast
4
1
1
+ See 1 more…
cell line
EndoC_BH1
6
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