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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
96
ATAC-seq
89
total RNA-seq
6
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
98
DNA accessibility
90
Transcription
6
DNA binding
Target of assay
6
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
87
fastq
68
bed narrowPeak
16
tsv
11
bam
5
bed bed3
5
bigBed narrowPeak
5
bigWig
4
txt
2
bed bed3+
Organism
199
Homo sapiens
Biosample type
101
tissue
93
primary cell
in vitro differentiated cells
6
cell line
Organ
67
pancreas
57
epithelium
36
heart
35
artery
35
blood vessel
35
vasculature
31
eye
8
bone element
8
skeleton
1
adipose tissue
1
brain
1
connective tissue
Project
101
AMP
76
HPAP
23
T1D
Genome assembly (visualization)
42
GRCh38
40
hg19
Lab
101
AMP-T2D consortium
76
Klaus Kaestner, Upenn
23
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
200 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
single cell RNA-seq
tissue
coronary artery
35
islet of Langerhans
11
5
6
2
retina
15
2
pigmented layer of retina
12
2
acetabular part of hip bone
1
1
+ See 6 more…
primary cell
exocrine cell
39
pancreatic alpha cell
2
27
pancreatic beta cell
2
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 3 more…
cell line
EndoC_BH1
3
2
1
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