Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
124
total RNA-seq
43
ATAC-seq
17
pCHi-C
1
DNAme array
1
single cell RNA-seq
Assay category
154
DNA binding
125
Transcription
43
DNA accessibility
1
DNA methylation
Target of assay
151
histone
151
histone modification
83
broad histone mark
68
narrow histone mark
3
control
Date released
689
February, 2021
406
November, 2017
343
August, 2017
341
May, 2020
306
October, 2019
277
August, 2021
267
May, 2021
218
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
56
March, 2020
56
November, 2019
51
December, 2017
49
April, 2018
47
September, 2023
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
286
bigWig
264
bam
174
bed narrowPeak
120
tsv
84
tagAlign
73
fastq
14
bigBed narrowPeak
2
bed bed3+
1
csv
Organism
340
Homo sapiens
Biosample type
279
primary cell
in vitro differentiated cells
40
tissue
21
cell line
Organ
130
pancreas
82
epithelium
2
heart
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
187
AMP
153
T1D
Genome assembly (visualization)
299
hg19
264
GRCh38
Lab
188
Kyle Gaulton, UCSD
152
AMP-T2D consortium
Audit category:
22
inconsistent ontology term
Audit category:
32
missing controlled_by
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
340 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
DNAme array
single cell RNA-seq
primary cell
monocyte
85
52
13
1
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
+ See 17 more…
tissue
islet of Langerhans
36
cardiac atrium
1
cardiac ventricle
1
pancreas
1
thymus
1
cell line
EndoC_BH1
1
4
16
See all biosamples
Download