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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
677
ChIP-seq
228
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
677
DNA binding
356
Transcription
101
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
370
transcription factor
164
histone modification
163
histone
140
control
87
broad histone mark
82
recombinant protein
76
narrow histone mark
73
RNA binding protein
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
324
November, 2017
233
August, 2017
76
February, 2023
73
November, 2018
73
September, 2018
60
October, 2018
51
December, 2017
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
24
May, 2022
17
October, 2017
12
January, 2019
11
September, 2017
8
December, 2018
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
3041
bam
2815
bigWig
1591
bed narrowPeak
1469
tsv
1157
fastq
971
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
1150
Homo sapiens
Biosample type
409
primary cell
377
tissue
367
cell line
in vitro differentiated cells
4
stem cell
Organ
471
pancreas
450
liver
238
epithelium
60
blood
bodily fluid
46
connective tissue
43
adipose tissue
24
spleen
21
brain
6
vasculature
3
blood vessel
2
musculature of body
Project
988
AMP
169
HPAP
Genome assembly (visualization)
836
hg19
779
GRCh38
1
hg18
Lab
962
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
audit script error
27
inconsistent control
7
inconsistent ontology term
Audit category:
83
missing controlled_by
Audit category:
39
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
1157 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
primary cell
pancreatic alpha cell
13
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
13
21
12
10
exocrine cell
39
pancreatic ductal cell
13
4
9
4
+ See 18 more…
tissue
islet of Langerhans
28
103
20
1
1
liver
67
1
2
1
body of pancreas
33
4
2
2
spleen
20
1
2
1
pancreas
16
2
1
+ See 8 more…
cell line
HepG2
360
5
1
1
stem cell
hESC
3
1
See all biosamples
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