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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
330
total RNA-seq
155
ChIP-seq
74
single cell RNA-seq
59
ATAC-seq
8
DNase-seq
4
WGBS
2
small RNA-seq
1
Hi-C
Assay category
406
Transcription
155
DNA binding
67
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
135
histone
135
histone modification
69
broad histone mark
66
narrow histone mark
18
transcription factor
9
RNA binding protein
2
control
Date released
153
July, 2018
152
August, 2017
72
September, 2018
51
November, 2019
42
October, 2018
41
May, 2021
39
April, 2018
26
February, 2021
8
October, 2019
7
August, 2020
7
September, 2017
6
March, 2020
6
November, 2018
5
October, 2017
4
July, 2019
4
June, 2019
3
August, 2018
3
September, 2020
2
March, 2019
1
June, 2018
1
May, 2019
Available data
619
bam
609
bigWig
406
tsv
357
fastq
186
bed narrowPeak
89
bigBed narrowPeak
29
bed bed3+
14
bed broadPeak
7
bigBed broadPeak
6
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
hdf5
Organism
627
Homo sapiens
Biosample type
386
tissue
192
primary cell
55
cell line
in vitro differentiated cells
Organ
633
pancreas
517
liver
512
connective tissue
424
adipose tissue
274
epithelium
265
heart
217
brain
205
kidney
191
vasculature
187
blood vessel
128
artery
96
limb
66
bone element
54
blood
54
bodily fluid
53
musculature of body
31
nerve
18
ureter
16
spleen
12
vein
8
embryo
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
617
AMP
10
HPAP
6
T1D
Genome assembly (visualization)
656
hg19
633
GRCh38
Lab
620
AMP-T2D consortium
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
52
inconsistent ontology term
Audit category:
54
missing controlled_by
Audit category:
9
inconsistent control read length
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
esophagus
BIOSAMPLE
ASSAY
633 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
tissue
islet of Langerhans
266
25
22
1
body of pancreas
2
26
4
4
2
2
pancreas
1
13
2
2
endocrine pancreas
14
primary cell
pancreatic alpha cell
10
7
12
13
pancreatic beta cell
10
7
12
10
pancreatic ductal cell
4
13
10
4
pancreatic acinar cell
4
8
12
5
pancreatic endocrine cell
23
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cell line
EndoC_BH1
33
13
1
Panc1
6
1
1
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