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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
ChIP-seq
151
ATAC-seq
102
single cell RNA-seq
55
total RNA-seq
28
DNase-seq
9
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
190
DNA binding
180
DNA accessibility
159
Transcription
10
DNA methylation
6
3D chromatin structure
Target of assay
151
histone
151
histone modification
78
broad histone mark
73
narrow histone mark
33
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
102
May, 2020
73
September, 2018
59
August, 2017
55
May, 2021
48
July, 2018
47
June, 2019
43
April, 2018
34
October, 2019
26
July, 2019
12
February, 2023
9
November, 2017
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
November, 2018
Available data
417
bam
413
bigWig
240
fastq
205
bed narrowPeak
164
tsv
103
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
34
bed bed3+
16
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
546
Homo sapiens
Biosample type
2367
tissue
585
cell line
546
primary cell
in vitro differentiated cells
8
stem cell
Organ
254
epithelium
194
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
546
AMP
324
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
435
hg19
335
GRCh38
Lab
511
AMP-T2D consortium
35
Kyle Gaulton, UCSD
Audit category:
43
inconsistent ontology term
1
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
organ_slims!
heart
BIOSAMPLE
ASSAY
546 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic beta cell
13
7
12
10
pancreatic alpha cell
13
6
12
10
CD8-positive, alpha-beta T cell
33
2
2
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
5
12
4
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