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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
272
ChIP-seq
Assay category
272
DNA binding
Target of assay
237
histone
237
histone modification
122
narrow histone mark
115
broad histone mark
30
control
5
transcription factor
Date released
84
May, 2021
66
November, 2017
51
August, 2017
49
October, 2019
14
October, 2017
8
February, 2021
Available data
2434
bam
2302
bigWig
1268
tsv
1258
bed narrowPeak
767
fastq
681
bigBed narrowPeak
272
tagAlign
258
bed broadPeak
234
bed bed3+
221
bigBed broadPeak
158
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
17
hic
14
bedpe bed3+
7
csv
6
bed bed3
4
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
Organism
265
Homo sapiens
Biosample type
168
tissue
96
primary cell
in vitro differentiated cells
8
cell line
Organ
118
brain
liver
16
pancreas
15
musculature of body
8
adipose tissue
8
connective tissue
6
artery
6
blood vessel
6
heart
6
vasculature
4
epithelium
1
pituitary gland
Project
188
AMP
84
T1D
Genome assembly (visualization)
197
GRCh38
179
hg19
Lab
188
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent assembly
biosample_type!
in vitro differentiated cells
organ_slims!
liver
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
272 results
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Clear Filters
ChIP-seq
tissue
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
brain
14
+ See 42 more…
primary cell
monocyte
84
skeletal muscle myoblast
12
cell line
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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