Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1673
ChIP-seq
1397
total RNA-seq
489
ATAC-seq
361
single cell RNA-seq
211
DNase-seq
87
RNA microarray
snATAC-seq
75
WGBS
50
pCHi-C
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
1397
Transcription
Date released
523
February, 2021
190
May, 2020
120
July, 2018
98
May, 2021
89
August, 2017
89
February, 2023
67
August, 2021
44
July, 2019
28
October, 2019
26
May, 2022
26
September, 2018
25
February, 2020
20
November, 2019
16
September, 2020
13
March, 2020
6
April, 2018
5
December, 2019
5
January, 2019
4
November, 2020
2
October, 2018
1
May, 2023
Available data
1194
tsv
1161
bam
1157
bigWig
228
fastq
59
txt
2
bed bed3+
Organism
1397
Homo sapiens
Biosample type
1037
tissue
247
primary cell
in vitro differentiated cells
113
cell line
Organ
465
connective tissue
403
pancreas
398
adipose tissue
189
liver
129
epithelium
71
heart
62
bone element
61
blood vessel
61
vasculature
60
kidney
56
artery
19
eye
17
brain
8
embryo
7
limb
6
musculature of body
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
1200
AMP
105
T1D
92
HPAP
Genome assembly (visualization)
1158
hg19
1156
GRCh38
Lab
1116
AMP-T2D consortium
110
Kyle Gaulton, UCSD
92
Klaus Kaestner, Upenn
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
10
Bing Ren, UCSD
Audit category:
41
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
thymus
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
1397 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
tissue
adipose tissue
382
islet of Langerhans
298
liver
167
bone tissue
58
kidney
49
+ See 47 more…
primary cell
monocyte
54
pancreatic alpha cell
52
exocrine cell
39
pancreatic beta cell
21
hepatocyte
5
+ See 45 more…
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
HepG2
14
H1-hESC
8
early embryonic cell
2
+ See 4 more…
See all biosamples
Download