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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
573
ChIP-seq
228
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
11
DNase-seq
4
RRBS
2
FAIRE-seq
1
GRO-seq
1
Hi-C
Assay category
573
DNA binding
356
Transcription
101
DNA accessibility
21
DNA methylation
1
3D chromatin structure
Target of assay
421
transcription factor
165
histone modification
histone
146
control
87
broad histone mark
83
RNA binding protein
82
recombinant protein
77
narrow histone mark
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
156
August, 2017
88
November, 2018
76
February, 2023
50
July, 2018
45
February, 2021
44
April, 2018
44
December, 2017
44
October, 2018
41
September, 2018
41
September, 2020
35
December, 2018
24
May, 2022
23
January, 2019
11
September, 2017
10
October, 2017
7
August, 2020
3
August, 2018
3
June, 2018
1
January, 2018
1
March, 2019
Available data
2396
bam
2120
bigWig
1468
tsv
1053
fastq
913
bed narrowPeak
646
bigBed narrowPeak
256
bed broadPeak
254
bigBed broadPeak
231
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
63
tagAlign
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
1052
Homo sapiens
Biosample type
411
cell line
336
primary cell
304
tissue
in vitro differentiated cells
2
stem cell
Organ
418
liver
371
pancreas
201
epithelium
59
blood
59
bodily fluid
45
connective tissue
42
adipose tissue
18
spleen
11
brain
4
vasculature
2
blood vessel
2
musculature of body
Project
884
AMP
169
HPAP
Genome assembly (visualization)
727
hg19
672
GRCh38
1
hg18
Lab
858
AMP-T2D consortium
169
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
27
audit script error
7
inconsistent ontology term
Audit category:
30
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
biosample_type!
in vitro differentiated cells
organ_slims!
thymus
target.investigated_as!
histone
BIOSAMPLE
ASSAY
1053 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
FAIRE-seq
GRO-seq
Hi-C
cell line
HepG2
345
5
1
1
GM12878
59
primary cell
pancreatic alpha cell
6
52
12
13
6
Langerhans cell
34
27
pancreatic beta cell
6
21
12
10
exocrine cell
39
pancreatic acinar cell
4
9
5
+ See 17 more…
tissue
islet of Langerhans
14
103
20
1
1
liver
55
1
2
1
body of pancreas
17
4
2
2
spleen
14
1
2
1
omental fat pad
11
1
1
+ See 8 more…
stem cell
hESC
1
1
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