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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1531
ChIP-seq
1336
total RNA-seq
443
ATAC-seq
355
single cell RNA-seq
200
DNase-seq
87
RNA microarray
84
snATAC-seq
73
WGBS
51
pCHi-C
25
Hi-C
20
RRBS
18
small RNA-seq
10
MeRIP-seq
5
STARR-seq
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
GRO-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
200
DNA accessibility
Date released
180
June, 2019
9
November, 2018
6
October, 2019
4
August, 2017
1
November, 2020
Available data
197
bam
197
bed narrowPeak
197
bigBed narrowPeak
197
bigWig
194
bed broadPeak
194
bigBed broadPeak
193
bed bed3+
11
fastq
Organism
200
Homo sapiens
Biosample type
173
tissue
25
primary cell
2
cell line
in vitro differentiated cells
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
vasculature
9
blood vessel
8
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
200
AMP
Genome assembly (visualization)
195
GRCh38
175
hg19
Lab
200
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
vasculature
BIOSAMPLE
ASSAY
200 results
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Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
skeletal muscle myoblast
2
+ See 13 more…
cell line
Panc1
1
glomerular visceral epithelial cell
1
See all biosamples
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