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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
total RNA-seq
49
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
2
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
399
Transcription
49
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
51
August, 2017
10
July, 2019
5
October, 2018
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bigWig
421
bam
399
tsv
24
fastq
13
bed narrowPeak
10
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
463
Homo sapiens
Biosample type
464
tissue
2
primary cell
in vitro differentiated cells
Organ
523
connective tissue
476
pancreas
464
adipose tissue
315
liver
297
heart
293
kidney
240
brain
158
bone element
117
blood vessel
117
vasculature
105
limb
78
musculature of body
66
artery
56
eye
32
nerve
20
lung
18
ureter
17
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
464
AMP
Genome assembly (visualization)
424
hg19
422
GRCh38
Lab
464
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
target.investigated_as!
control
BIOSAMPLE
ASSAY
464 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
31
3
omental fat pad
5
3
1
2
1
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
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