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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
6
ATAC-seq
6
WGBS
2
DNase-seq
1
RNA microarray
1
total RNA-seq
Assay category
73
DNA binding
8
DNA accessibility
6
DNA methylation
1
Transcription
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
57
August, 2017
23
October, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
88
Homo sapiens
Biosample type
89
tissue
in vitro differentiated cells
Organ
602
liver
526
pancreas
346
epithelium
330
kidney
260
brain
185
heart
168
vasculature
162
blood vessel
115
limb
114
connective tissue
101
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
89
AMP
Genome assembly (visualization)
28
hg19
26
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
omental fat pad
11
1
2
subcutaneous adipose tissue
12
1
1
white adipose tissue
12
adipose tissue
2
3
3
1
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