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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
78
ChIP-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
3
ATAC-seq
2
pCHi-C
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
Assay category
410
Transcription
78
DNA binding
12
DNA methylation
6
3D chromatin structure
4
DNA accessibility
Target of assay
36
histone
36
histone modification
30
control
24
broad histone mark
12
narrow histone mark
12
transcription factor
Date released
386
February, 2021
67
August, 2017
22
July, 2019
18
October, 2018
6
March, 2020
4
February, 2020
2
January, 2018
2
June, 2019
2
May, 2022
1
August, 2021
1
May, 2019
1
May, 2023
1
October, 2019
Available data
499
bam
493
bigWig
410
tsv
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
45
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
512
Homo sapiens
Biosample type
506
tissue
7
primary cell
in vitro differentiated cells
Organ
731
pancreas
557
connective tissue
477
adipose tissue
367
epithelium
349
liver
201
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
513
AMP
Genome assembly (visualization)
426
hg19
420
GRCh38
Lab
513
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
513 results
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total RNA-seq
ChIP-seq
WGBS
Hi-C
RRBS
small RNA-seq
ATAC-seq
pCHi-C
RNA microarray
single cell RNA-seq
snATAC-seq
tissue
adipose tissue
382
1
3
2
1
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
7
10
1
1
skeletal muscle tissue
1
9
4
1
1
1
1
omental fat pad
5
8
1
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primary cell
skeletal muscle satellite cell
1
1
1
mesenchymal stem cell of adipose
1
1
skeletal muscle cell
1
1
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