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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
35
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
1
RNA microarray
1
single cell RNA-seq
1
snATAC-seq
1
total RNA-seq
Assay category
112
DNA binding
43
DNA accessibility
12
DNA methylation
6
3D chromatin structure
2
Transcription
Target of assay
65
histone
65
histone modification
40
broad histone mark
30
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
83
August, 2017
44
June, 2019
23
October, 2018
7
May, 2019
6
July, 2019
2
January, 2018
2
March, 2020
2
May, 2022
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
499
bam
493
bigWig
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
45
fastq
40
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
175
Homo sapiens
Biosample type
164
tissue
12
primary cell
in vitro differentiated cells
Organ
602
liver
526
pancreas
346
epithelium
330
kidney
260
brain
225
heart
168
vasculature
162
blood vessel
115
limb
114
connective tissue
101
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
56
eye
38
nerve
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
176
AMP
Genome assembly (visualization)
95
hg19
73
GRCh38
Lab
176
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
1
audit script error
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
files.file_type!
tsv
BIOSAMPLE
ASSAY
176 results
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ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
RNA microarray
single cell RNA-seq
snATAC-seq
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
4
1
1
muscle of leg
7
13
1
muscle of arm
17
omental fat pad
11
2
1
+ See 8 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
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