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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
404
total RNA-seq
112
ChIP-seq
35
DNase-seq
7
ATAC-seq
7
WGBS
6
Hi-C
5
RRBS
5
small RNA-seq
2
pCHi-C
1
RNA microarray
Assay category
409
Transcription
112
DNA binding
42
DNA accessibility
12
DNA methylation
6
3D chromatin structure
Target of assay
65
histone
65
histone modification
40
broad histone mark
30
control
25
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
83
August, 2017
44
June, 2019
23
October, 2018
22
July, 2019
7
May, 2019
6
March, 2020
4
February, 2020
2
January, 2018
May, 2022
1
August, 2021
1
February, 2023
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
499
bam
493
bigWig
410
tsv
73
bed narrowPeak
57
bigBed narrowPeak
49
bed broadPeak
45
fastq
39
bed bed3+
35
bigBed broadPeak
23
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
583
Homo sapiens
Biosample type
568
tissue
16
primary cell
in vitro differentiated cells
Organ
839
pancreas
736
liver
587
connective tissue
490
adipose tissue
420
epithelium
392
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
584
AMP
Genome assembly (visualization)
498
hg19
477
GRCh38
Lab
584
AMP-T2D consortium
Audit category:
10
inconsistent ontology term
Audit category:
12
missing controlled_by
biosample_type!
in vitro differentiated cells
month_released!
May, 2022
BIOSAMPLE
ASSAY
584 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
Hi-C
RRBS
small RNA-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
1
22
1
4
1
subcutaneous adipose tissue
7
12
1
1
1
muscle of leg
7
13
1
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
mesenchymal stem cell of adipose
1
1
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