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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
total RNA-seq
13
ChIP-seq
6
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
ATAC-seq
1
Hi-C
1
RRBS
Assay category
71
Transcription
13
DNA binding
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
9
histone
9
histone modification
5
narrow histone mark
4
broad histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
61
February, 2021
17
June, 2019
6
July, 2019
6
November, 2020
2
April, 2018
2
July, 2018
1
March, 2020
1
May, 2021
1
October, 2019
Available data
92
bam
88
bigWig
72
tsv
17
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
97
Homo sapiens
Biosample type
in vitro differentiated cells
59
tissue
37
primary cell
1
stem cell
Organ
943
pancreas
776
liver
587
connective tissue
500
epithelium
adipose tissue
354
kidney
352
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
1
T1D
Genome assembly (visualization)
90
hg19
88
GRCh38
Lab
96
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
biosample_type!
in vitro differentiated cells
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
ATAC-seq
Hi-C
RRBS
tissue
bone tissue
58
islet of Langerhans
1
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
1
2
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
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stem cell
mesenchymal stem cell
1
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