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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
489
ATAC-seq
211
DNase-seq
83
snATAC-seq
5
FAIRE-seq
Assay category
1776
Transcription
1626
DNA binding
788
DNA accessibility
97
DNA methylation
30
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
100
May, 2020
99
May, 2022
93
February, 2023
70
August, 2021
45
February, 2021
29
May, 2021
29
October, 2019
21
November, 2019
16
January, 2021
14
September, 2018
11
May, 2023
10
August, 2017
10
November, 2018
9
April, 2020
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
470
bed narrowPeak
371
bam
337
bigWig
238
bigBed narrowPeak
207
bed broadPeak
205
bed bed3+
205
bigBed broadPeak
101
fastq
64
xls
60
zippedFastqFolder
14
tsv
7
bed bed3
1
tar
1
txt
Organism
788
Homo sapiens
Biosample type
469
tissue
288
primary cell
in vitro differentiated cells
31
cell line
Organ
173
pancreas
163
kidney
123
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
32
eye
29
liver
18
ureter
16
connective tissue
12
bone element
12
skeleton
9
blood
9
bodily fluid
9
lung
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
653
AMP
97
HPAP
29
T1D
9
LungMap
Genome assembly (visualization)
423
GRCh38
410
hg19
Lab
529
AMP-T2D consortium
97
Klaus Kaestner, Upenn
81
Katalin Susztak, Upenn
47
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
9
Xin Sun, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
36
inconsistent ontology term
29
audit script error
1
inconsistent replicate
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
788 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
primary cell
Langerhans cell
48
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
+ See 58 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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