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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
204
DNase-seq
21
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
205
DNA accessibility
21
DNA binding
5
3D chromatin structure
2
Transcription
Target of assay
17
histone
17
histone modification
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
187
June, 2019
13
August, 2017
9
November, 2018
8
October, 2019
4
July, 2019
3
August, 2021
3
December, 2017
2
February, 2021
2
May, 2021
2
September, 2017
1
May, 2022
1
November, 2020
Available data
2646
bam
2445
bigWig
1469
tsv
1242
bed narrowPeak
789
fastq
616
bigBed narrowPeak
346
tagAlign
266
bed broadPeak
235
bed bed3+
235
bigBed broadPeak
157
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
3
cool
1
bedpe
1
tagAlign bed3+
1
tar
1
vcf
Organism
235
Homo sapiens
Biosample type
192
tissue
37
primary cell
in vitro differentiated cells
3
cell line
3
stem cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
22
pancreas
21
epithelium
18
ureter
13
vasculature
11
blood vessel
11
liver
10
connective tissue
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
235
AMP
Genome assembly (visualization)
226
GRCh38
212
hg19
Lab
233
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
Audit category:
2
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
235 results
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DNase-seq
ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
islet of Langerhans
14
kidney
13
+ See 41 more…
primary cell
hepatocyte
1
3
cardiac fibroblast
3
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 19 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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