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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
5
Hi-C
2
pCHi-C
2
total RNA-seq
1
snATAC-seq
Assay category
17
DNA binding
5
3D chromatin structure
2
Transcription
1
DNA accessibility
Target of assay
histone
17
histone modification
13
transcription factor
9
narrow histone mark
8
broad histone mark
4
control
2
RNA binding protein
Date released
14
August, 2017
4
July, 2019
2
February, 2021
2
May, 2021
2
September, 2017
1
December, 2017
1
May, 2022
1
October, 2019
Available data
2396
bam
2120
bigWig
1469
tsv
1053
fastq
913
bed narrowPeak
bigBed narrowPeak
256
bed broadPeak
254
bigBed broadPeak
231
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
63
tagAlign
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
vcf
Organism
27
Homo sapiens
Biosample type
in vitro differentiated cells
17
tissue
7
primary cell
2
cell line
1
stem cell
Organ
10
pancreas
6
connective tissue
5
liver
4
adipose tissue
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
musculature of body
Project
27
AMP
Genome assembly (visualization)
27
hg19
18
GRCh38
Lab
25
AMP-T2D consortium
2
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
target.investigated_as!
histone
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
Hi-C
pCHi-C
total RNA-seq
snATAC-seq
tissue
islet of Langerhans
9
white adipose tissue
4
liver
3
skeletal muscle tissue
1
primary cell
CD8-positive, alpha-beta T cell
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 1 more…
cell line
HepG2
1
Panc1
1
stem cell
hESC
1
See all biosamples
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