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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
Assay category
97
DNA binding
Target of assay
860
histone modification
859
histone
459
transcription factor
440
narrow histone mark
419
broad histone mark
304
control
97
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
37
November, 2017
21
November, 2018
11
October, 2018
6
January, 2019
5
May, 2019
4
April, 2019
4
August, 2017
4
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
November, 2019
Available data
96
bam
94
bigWig
93
bed narrowPeak
91
bigBed narrowPeak
83
fastq
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
97
Homo sapiens
Biosample type
64
cell line
23
tissue
in vitro differentiated cells
10
primary cell
Organ
56
liver
10
blood
10
bodily fluid
8
pancreas
6
connective tissue
6
heart
5
adipose tissue
5
epithelium
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
97
AMP
Genome assembly (visualization)
93
hg19
88
GRCh38
Lab
96
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
biosample_type!
in vitro differentiated cells
month_released!
November, 2019
BIOSAMPLE
ASSAY
97 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
tissue
body of pancreas
5
heart left ventricle
3
omental fat pad
3
islet of Langerhans
2
subcutaneous adipose tissue
2
+ See 8 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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