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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
706
ChIP-seq
Assay category
706
DNA binding
Target of assay
706
histone modification
705
histone
448
transcription factor
364
narrow histone mark
341
broad histone mark
276
control
97
RNA binding protein
89
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
173
October, 2019
92
May, 2019
85
May, 2021
78
August, 2017
75
November, 2017
59
April, 2019
32
September, 2018
30
October, 2018
27
May, 2020
19
June, 2019
10
November, 2019
7
December, 2017
7
January, 2019
6
October, 2017
3
August, 2021
3
March, 2020
Available data
756
bigWig
738
bed narrowPeak
706
bam
379
bigBed narrowPeak
295
tagAlign
165
fastq
65
bed broadPeak
30
bigBed broadPeak
17
bed bed3+
1
tagAlign bed3+
Organism
700
Homo sapiens
Biosample type
466
tissue
203
primary cell
in vitro differentiated cells
35
cell line
2
stem cell
Organ
166
brain
136
pancreas
78
epithelium
71
vasculature
70
blood vessel
68
liver
61
heart
48
limb
30
kidney
24
nerve
20
artery
15
vein
14
musculature of body
9
connective tissue
6
spleen
1
adipose tissue
1
blood
1
bodily fluid
1
eye
1
pituitary gland
Project
618
AMP
88
T1D
Genome assembly (visualization)
689
GRCh38
650
hg19
Lab
622
AMP-T2D consortium
84
Kyle Gaulton, UCSD
Audit category:
31
inconsistent ontology term
Audit category:
52
missing controlled_by
Audit category:
24
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
706 results
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Clear Filters
ChIP-seq
tissue
liver
45
tibial nerve
24
heart left ventricle
23
kidney
20
tibial artery
18
+ See 95 more…
primary cell
monocyte
84
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
skeletal muscle myoblast
12
+ See 15 more…
cell line
HepG2
15
EndoC_BH1
12
Panc1
7
GM12878
1
stem cell
hESC
2
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