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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
Assay category
329
DNA binding
Target of assay
633
histone modification
632
histone
450
transcription factor
329
narrow histone mark
303
broad histone mark
271
control
89
recombinant protein
88
RNA binding protein
32
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
132
October, 2019
50
August, 2017
35
November, 2017
33
May, 2019
27
May, 2020
23
April, 2019
11
October, 2018
4
November, 2019
3
December, 2017
3
January, 2019
3
March, 2020
2
August, 2021
2
October, 2017
1
May, 2021
Available data
273
bigWig
270
bed narrowPeak
261
bam
118
bigBed narrowPeak
115
tagAlign
37
fastq
21
bed broadPeak
7
bed bed3+
6
bigBed broadPeak
1
tagAlign bed3+
Organism
327
Homo sapiens
Biosample type
309
tissue
primary cell
in vitro differentiated cells
19
cell line
1
stem cell
Organ
114
brain
53
liver
41
pancreas
23
heart
18
blood vessel
18
vasculature
15
limb
13
connective tissue
12
adipose tissue
10
kidney
9
musculature of body
8
nerve
6
artery
6
epithelium
4
gonad
4
ovary
2
eye
2
spleen
1
blood
1
bodily fluid
1
lymph node
1
pituitary gland
Project
325
AMP
4
T1D
Genome assembly (visualization)
259
hg19
253
GRCh38
Lab
327
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
9
inconsistent control read length
biosample_type!
in vitro differentiated cells
primary cell
BIOSAMPLE
ASSAY
329 results
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Clear Filters
ChIP-seq
tissue
liver
42
islet of Langerhans
37
subcutaneous abdominal adipose tissue
11
kidney
10
heart left ventricle
9
+ See 99 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
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